STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1832Endo-1,4-beta-xylanase; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ttu:TERTU_3398 xylanase; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; SPTR: Xylanase; PFAM: Glycosyl hydrolase family 10. (365 aa)    
Predicted Functional Partners:
Lbys_2333
Xylan 1,4-beta-xylosidase; InterPro IPR006710; KEGG: ttu:TERTU_1419 glycoside hydrolase family 43 domain protein; PFAM: glycoside hydrolase family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase family 43 domain protein; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.921
Lbys_2324
Esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1407 putative esterase; PFAM: esterase; SPTR: Putative esterase; PFAM: Putative esterase.
   0.887
Lbys_2330
KEGG: sli:Slin_1718 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolase family 67 N-terminus.
     0.804
Lbys_2328
COGs: COG3661 Alpha-glucuronidase; InterPro IPR011395:IPR011100:IPR011099; KEGG: sli:Slin_6197 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; PRIAM: Alpha-glucuronidase; SPTR: Alpha-glucuronidase; PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.792
Lbys_2326
Alpha-N-arabinofuranosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1423 xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; PRIAM: Alpha-N-arabinofuranosidase; SPTR: Xylan 1,4-beta-xylosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
   
 0.759
Lbys_2325
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: zpr:ZPR_1033 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
   
 0.727
Lbys_2332
Sugar (Glycoside-Pentoside-Hexuronide) transporter; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR001927:IPR011701; KEGG: fjo:Fjoh_1997 sugar (glycoside-pentoside-hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Sugar (Glycoside-Pentoside-Hexuronide) transporter; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: Sugar (and other) transporter; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
     0.684
Lbys_2334
InterPro IPR005181:IPR006104; KEGG: sli:Slin_1717 protein of unknown function DUF303 acetylesterase putative; PFAM: protein of unknown function DUF303 acetylesterase; glycoside hydrolase family 2 sugar binding; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303); Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.683
Lbys_1831
Hypothetical protein.
       0.576
Lbys_2254
Cellulase; InterPro IPR001547; KEGG: scl:sce4910 cellulase; PFAM: glycoside hydrolase family 5; PRIAM: Cellulase; SPTR: Cellulase; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.528
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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