STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1877Protein of unknown function DUF892; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: fjo:Fjoh_3365 hypothetical protein; PFAM: protein of unknown function DUF892; SPTR: Protein of hypothetical function DUF892; PFAM: Domain of unknown function (DUF892). (205 aa)    
Predicted Functional Partners:
Lbys_0988
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: gfo:GFO_0277 uncharacterized stress protein (general stress protein 26); PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Uncharacterized stress protein (General stress protein 26); PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.717
Lbys_1878
Regulatory protein TetR; InterPro IPR001647; KEGG: phe:Phep_3455 regulatory protein TetR; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
       0.547
Lbys_1879
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: fjo:Fjoh_3965 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
       0.547
Lbys_1649
FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: phe:Phep_4211 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase.
  
     0.530
Lbys_1881
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
    0.436
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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