Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_1950Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: avi:Avi_5579 hypothetical protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Putative uncharacterized protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain. (456 aa)    
Predicted Functional Partners:
Lbys_1768
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR017909:IPR006311; KEGG: bth:BT_3470 putative dehydrogenase; PFAM: oxidoreductase domain protein; SPTR: Putative uncharacterized protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
     0.540
lysS
COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR004365:IPR004364:IPR018149:IPR002313:IPR 006195; KEGG: dfe:Dfer_4009 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.485
Lbys_1949
YceI family protein; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_0333 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain; Belongs to the UPF0312 family.
       0.481
Lbys_1755
alpha-L-rhamnosidase; InterPro IPR013737:IPR008902:IPR016007; KEGG: bth:BT_2524 alpha-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
  
    0.461
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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