STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1963Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase. (180 aa)    
Predicted Functional Partners:
Lbys_0740
Integrase catalytic region; COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bac:BamMC406_2352 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; manually curated; PFAM: Integrase core domain.
 
    0.789
Lbys_3133
Integrase catalytic region; COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bcb:BCB4264_A4383 integrase core domain protein; PFAM: Integrase catalytic region; SPTR: Transposase; PFAM: Integrase core domain.
 
    0.789
Lbys_1964
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_0193 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; SPTR: Putative xylosidase/arabinosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
       0.652
Lbys_1965
Conserved repeat domain protein; InterPro IPR000601:IPR001434:IPR007110; KEGG: fps:FP0688 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; PFAM: PKD domain.
       0.444
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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