STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1964Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_0193 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; SPTR: Putative xylosidase/arabinosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (313 aa)    
Predicted Functional Partners:
Lbys_2349
Glycoside hydrolase family 43; InterPro IPR006710; KEGG: bth:BT_4152 beta-galactosidase I; PFAM: glycoside hydrolase family 43; SPTR: Beta-galactosidase I; PFAM: Glycosyl hydrolases family 43.
 
     0.921
Lbys_2325
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: zpr:ZPR_1033 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.869
Lbys_1963
Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: hin:HI1720 hypothetical protein; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase.
       0.652
Lbys_2699
Glycoside hydrolase family 2 sugar binding protein; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102; KEGG: cpi:Cpin_6173 glycoside hydrolase family 2 sugar binding; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; SPTR: Glycoside hydrolase family 2 sugar binding; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
 
     0.615
Lbys_2511
alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: zpr:ZPR_2145 alpha-L-arabinofuranosidase A precursor; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase A; PFAM: Alpha-L-arabinofuranosidase C-terminus.
  
 0.565
Lbys_1965
Conserved repeat domain protein; InterPro IPR000601:IPR001434:IPR007110; KEGG: fps:FP0688 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; PFAM: PKD domain.
       0.519
Lbys_3420
RagB/SusD domain protein; InterPro IPR012944; KEGG: phe:Phep_4138 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Outer membrane protein; PFAM: SusD family.
  
     0.503
Lbys_2263
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_4761 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.460
Lbys_2513
Protein of unknown function DUF1680; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: fjo:Fjoh_3876 hypothetical protein; PFAM: protein of unknown function DUF1680; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680).
     0.458
Lbys_2739
alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720:IPR003305; KEGG: cpi:Cpin_5739 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase domain protein; Carbohydrate-binding CenC domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase domain protein; PFAM: Carbohydrate binding domain; Alpha-L-arabinofuranosidase C-terminus.
  
 0.432
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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