STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1968Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3904 peptidase M28; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: Peptidase family M28. (333 aa)    
Predicted Functional Partners:
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.773
Lbys_1969
KEGG: sli:Slin_5597 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.641
Lbys_1529
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR001440:IPR011659:IPR006665:IPR019734:IPR 013026:IPR006664; KEGG: dfe:Dfer_4338 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; Tetratricopeptide TPR_1 repeat-containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; Tetratricopeptide repeat; OmpA family.
 
 
  0.489
Lbys_1722
InterPro IPR019859; KEGG: sli:Slin_3223 gliding motility-associated protein GldM; SPTR: Gliding motility-associated protein GldM; TIGRFAM: gliding motility-associated protein GldM; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM.
  
     0.473
Lbys_2649
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062:IPR018060:IPR000005; KEGG: dfe:Dfer_3823 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.464
Lbys_3353
KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.454
Lbys_0662
KEGG: dfe:Dfer_4263 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.439
Lbys_2177
KEGG: dfe:Dfer_4247 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.437
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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