Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1969KEGG: sli:Slin_5597 hypothetical protein; SPTR: Putative uncharacterized protein. (312 aa)    
Predicted Functional Partners:
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.750
Lbys_2898
KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.748
Lbys_2105
KEGG: dfe:Dfer_3011 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
 
     0.734
Lbys_1244
KEGG: dfe:Dfer_1053 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.727
Lbys_3511
InterPro IPR003825; KEGG: dfe:Dfer_4730 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein.
  
     0.716
Lbys_2285
Hypothetical protein; InterPro IPR013026:IPR022272; KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein.
  
     0.706
Lbys_3248
KEGG: sli:Slin_5161 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.701
Lbys_2954
Hypothetical protein; KEGG: dfe:Dfer_3689 PKD domain containing protein; SPTR: PKD domain containing protein.
  
    0.699
Lbys_1667
KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.694
Lbys_3023
KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.691
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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