STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1982Hypothetical protein; KEGG: pfh:PFHG_03089 conserved hypothetical protein; SPTR: Conserved Plasmodium membrane protein. (238 aa)    
Predicted Functional Partners:
Lbys_1983
KEGG: tva:TVAG_017660 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.568
Lbys_1984
Hypothetical protein; KEGG: amu:Amuc_1604 NADH dehydrogenase (quinone); SPTR: Predicted protein.
       0.481
Lbys_1979
IS66 Orf2 family protein; InterPro IPR008878; KEGG: zpr:ZPR_3419 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; manually curated; PFAM: IS66 Orf2 like protein.
       0.464
Lbys_1980
KEGG: dal:Dalk_5240 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.464
Lbys_1981
Integrase catalytic region; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: sli:Slin_6980 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region; PFAM: Integrase core domain.
       0.464
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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