Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_1986TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (1067 aa)    
Predicted Functional Partners:
Lbys_1987
KEGG: cpi:Cpin_2265 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
 
   0.950
Lbys_1985
InterPro IPR000866:IPR017936; KEGG: phe:Phep_0951 redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Redoxin domain protein; PFAM: AhpC/TSA family.
 
     0.893
Lbys_1367
Hypothetical protein; InterPro IPR019734:IPR013026; KEGG: phe:Phep_1035 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
 
   0.816
Lbys_2442
KEGG: phe:Phep_0952 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; PFAM: SusD family.
 
 
   0.816
Lbys_2440
Redoxin domain protein; InterPro IPR017936:IPR013740; KEGG: phe:Phep_0951 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Redoxin domain protein; PFAM: Thioredoxin; Protein of unknown function (DUF3738).
 
     0.688
Lbys_1365
KEGG: cpi:Cpin_3811 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.681
Lbys_2444
KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.640
Lbys_1989
KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.629
Lbys_1369
Redoxin domain protein; InterPro IPR013740:IPR017936; KEGG: cpi:Cpin_3163 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin domain protein; SPTR: Possible thiol:disulfide interchange protein TlpA; PFAM: AhpC/TSA family.
 
     0.611
Lbys_2115
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_6450 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: SusD/RagB family protein; PFAM: SusD family.
 
 
   0.587
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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