Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_1987KEGG: cpi:Cpin_2265 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family. (452 aa)    
Predicted Functional Partners:
Lbys_1986
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
 
   0.950
Lbys_1985
InterPro IPR000866:IPR017936; KEGG: phe:Phep_0951 redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Redoxin domain protein; PFAM: AhpC/TSA family.
 
     0.859
Lbys_1368
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_2264 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.775
Lbys_2441
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
     0.775
Lbys_1365
KEGG: cpi:Cpin_3811 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.731
Lbys_2444
KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.708
Lbys_1989
KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.702
Lbys_0486
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: bfs:BF0596 putative surface membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
 
   0.650
Lbys_2440
Redoxin domain protein; InterPro IPR017936:IPR013740; KEGG: phe:Phep_0951 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Redoxin domain protein; PFAM: Thioredoxin; Protein of unknown function (DUF3738).
  
     0.650
Lbys_0004
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2610 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
 
   0.590
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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