STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Lbys_1999Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR003594:IPR010559; KEGG: fba:FIC_00181 sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Possible sensor protein; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (570 aa)    
Predicted Functional Partners:
Lbys_1998
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.957
Lbys_0524
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_3159 response regulator receiver; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.819
Lbys_3273
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_1345 LytTR family two component transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.819
Lbys_0294
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_1841 response regulator receiver; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.818
Lbys_0831
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_0588 response regulator receiver; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.818
Lbys_1861
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: gfo:GFO_0740 two-component response transcriptional regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two-component system response regulator containing LytTR DNA-binding domain; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.818
Lbys_2538
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_5161 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.818
Lbys_2868
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492:IPR000215; KEGG: cpi:Cpin_5598 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.818
Lbys_2958
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_6586 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.817
Lbys_3124
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_6406 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   0.817
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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