STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2000InterPro IPR008160; KEGG: coc:Coch_1525 hypothetical protein; PFAM: Collagen triple helix repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Collagen triple helix repeat (20 copies). (324 aa)    
Predicted Functional Partners:
Lbys_2002
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.776
Lbys_2001
Hypothetical protein; InterPro IPR002047; KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_2003
Hypothetical protein; InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein.
       0.773
Lbys_1998
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
       0.542
Lbys_1999
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR003594:IPR010559; KEGG: fba:FIC_00181 sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Possible sensor protein; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.542
Lbys_0636
5'(3')-deoxyribonucleotidase; COGs: COG4502 conserved hypothetical protein; KEGG: rbi:RB2501_10642 5'(3')-deoxyribonucleotidase; SPTR: 5'(3')-deoxyribonucleotidase; PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C).
  
     0.433
Lbys_1641
Glycoside hydrolase family 28; COGs: COG5434 Endopygalactorunase; InterPro IPR001087:IPR000743:IPR006626; KEGG: cpi:Cpin_5506 lipolytic protein G-D-S-L family; PFAM: glycoside hydrolase family 28; lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase.
  
   0.420
Lbys_1997
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: dfe:Dfer_2571 transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.409
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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