STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2003Hypothetical protein; InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein. (670 aa)    
Predicted Functional Partners:
Lbys_2002
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.952
Lbys_2001
Hypothetical protein; InterPro IPR002047; KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.947
Lbys_2991
Hypothetical protein; KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; TIGRFAM: Bacteroides forsythus 147-residue repeat.
 
    0.801
Lbys_0681
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides forsythus 147-residue repeat.
 
    0.799
Lbys_0686
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.799
Lbys_0682
KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.778
Lbys_0687
KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.778
Lbys_2992
KEGG: cpi:Cpin_2775 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.778
Lbys_2000
InterPro IPR008160; KEGG: coc:Coch_1525 hypothetical protein; PFAM: Collagen triple helix repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Collagen triple helix repeat (20 copies).
       0.773
Lbys_1998
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
       0.542
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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