STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2004InterPro IPR011933; KEGG: sli:Slin_1217 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain. (688 aa)    
Predicted Functional Partners:
Lbys_3041
Protein of unknown function DUF58; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881:IPR002035; KEGG: sli:Slin_4278 hypothetical protein; PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF58.
 
  
 0.791
Lbys_2592
Hypothetical protein; COGs: COG1196 Chromosome segregation ATPase; KEGG: dfe:Dfer_3800 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.782
Lbys_1003
KEGG: sli:Slin_1374 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.780
Lbys_2589
InterPro IPR013026; KEGG: dfe:Dfer_3805 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein.
 
     0.777
Lbys_0891
KEGG: sli:Slin_1353 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.776
Lbys_1336
KEGG: dfe:Dfer_5608 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.773
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.722
Lbys_1727
KEGG: sli:Slin_3228 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.721
Lbys_1110
InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_3219 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein; manually curated.
 
     0.697
Lbys_0448
KEGG: dfe:Dfer_4469 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.695
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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