STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2015KEGG: sli:Slin_1179 putative lipoprotein; SPTR: Putative lipoprotein. (297 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.709
Lbys_2689
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6010 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
  
    0.551
Lbys_2905
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3882 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain.
  
 
   0.525
Lbys_2690
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_6011 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.496
Lbys_2013
Amidophosphoribosyltransferase; COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583:IPR004108:IPR017932; KEGG: sli:Slin_5971 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; hydrogenase large subunit domain protein; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; manually curated; PFAM: Glutamine amidotransferases class-II.
       0.420
Lbys_3416
Chaperonin Cpn10; InterPro IPR020818; KEGG: sli:Slin_1082 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: Chaperonin Cpn10; PFAM: Chaperonin 10 Kd subunit.
  
     0.412
Lbys_0889
KEGG: sli:Slin_2427 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.400
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.