Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Lbys_2045Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR000792; KEGG: sli:Slin_4426 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family. (156 aa)    
Predicted Functional Partners:
Lbys_2043
NUDIX hydrolase; InterPro IPR020084:IPR000086; KEGG: dfe:Dfer_3873 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain.
       0.773
Lbys_2044
KEGG: sli:Slin_4393 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_1667
KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.672
Lbys_1202
Hypothetical protein; InterPro IPR020003; KEGG: fps:FP1621 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.629
Lbys_0997
KEGG: dfe:Dfer_2374 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.591
Lbys_1537
PDZ/DHR/GLGF domain protein; InterPro IPR001969:IPR001478; KEGG: dfe:Dfer_3870 PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: PDZ/DHR/GLGF domain protein.
  
     0.591
Lbys_1683
InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1399.
  
     0.584
Lbys_2046
Peptidase M50; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478:IPR008915; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SPTR: Membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.
  
  
 0.525
Lbys_2983
KEGG: dfe:Dfer_3773 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.517
Lbys_1432
InterPro IPR007139; KEGG: sli:Slin_2892 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349).
  
     0.489
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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