Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2102KEGG: dfe:Dfer_3925 conserved hypothetical protein, membrane or secreted; SPTR: Putative uncharacterized protein. (844 aa)    
Predicted Functional Partners:
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
 
      0.623
Lbys_2103
Phospholipase D/Transphosphatidylase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
       0.618
Lbys_2097
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1227 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.610
Lbys_2098
KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.610
Lbys_2099
Hypothetical protein; KEGG: mdo:100012576 similar to Thrombospondin type-1 domain-containing protein 7B; SPTR: Prephenate dehydratase.
       0.610
Lbys_2100
KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.610
Lbys_2101
KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MG2 domain.
       0.610
Lbys_0620
InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; PFAM: Zinc carboxypeptidase.
  
     0.593
Lbys_2096
Hypothetical protein; KEGG: dsi:Dsim_GD20893 GD20893 gene product from transcript GD20893-RA; SPTR: Putative uncharacterized protein.
       0.590
Lbys_1452
KEGG: dfe:Dfer_3389 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.475
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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