STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2113Lipocalin family protein; COGs: COG3040 Bacterial lipocalin; InterPro IPR022272:IPR002446:IPR022271:IPR013208; KEGG: fjo:Fjoh_2134 lipocalin family protein; PFAM: Lipocalin family protein; SPTR: Outer membrane lipoprotein (Lipocalin); PFAM: Lipocalin-like domain; Belongs to the calycin superfamily. Lipocalin family. (174 aa)    
Predicted Functional Partners:
Lbys_0508
Domain of unknown function DUF1731; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR013549:IPR010099; KEGG: bal:BACI_c05080 putative epimerase; PFAM: domain of unknown function DUF1731; SPTR: Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777.
     0.879
Lbys_2112
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fjo:Fjoh_0498 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase.
       0.580
Lbys_2114
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_0454 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.472
Lbys_2115
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_6450 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: SusD/RagB family protein; PFAM: SusD family.
       0.458
Lbys_2111
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fjo:Fjoh_2821 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
       0.421
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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