STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2139Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: fba:FIC_02393 Mn-dependent transcriptional regulator MntR; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: Metal-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain. (218 aa)    
Predicted Functional Partners:
Lbys_2138
Alcohol dehydrogenase zinc-binding domain protein; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149:IPR002539; KEGG: maq:Maqu_2810 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; MaoC domain protein dehydratase; SPTR: Alcohol dehydrogenase, zinc-binding domain protein; PFAM: MaoC like domain; Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
  
    0.563
Lbys_2140
Transcriptional regulator, TrmB; COGs: COG1510 transcriptional regulator protein; KEGG: sli:Slin_3598 transcriptional regulator protein-like protein; SPTR: Transcriptional regulator protein-like protein; manually curated; PFAM: Sugar-specific transcriptional regulator TrmB; Belongs to the GbsR family.
       0.512
Lbys_0508
Domain of unknown function DUF1731; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR013549:IPR010099; KEGG: bal:BACI_c05080 putative epimerase; PFAM: domain of unknown function DUF1731; SPTR: Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777.
   
    0.468
Lbys_0646
Zinc/iron permease; COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: cbh:CLC_1220 ZIP family zinc transporter; PFAM: zinc/iron permease; SPTR: Zinc transporter, ZIP family; PFAM: ZIP Zinc transporter.
  
  
 0.429
Lbys_1230
Putative transmembrane transport protein; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; KEGG: dfe:Dfer_4281 putative transmembrane transport protein; SPTR: Putative transmembrane transport protein; PFAM: Natural resistance-associated macrophage protein.
  
  
 0.411
Lbys_0622
COGs: COG0681 Signal peptidase I; InterPro IPR019758:IPR019759:IPR000223; KEGG: sli:Slin_0245 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
   
    0.408
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.