Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbys_2146DoxX family protein; InterPro IPR011637; KEGG: cpi:Cpin_6032 DoxX family protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX. (125 aa)    
Predicted Functional Partners:
Lbys_2147
KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.655
Lbys_0423
Hypothetical protein; InterPro IPR016944; KEGG: phe:Phep_2123 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.524
Lbys_1875
KEGG: sli:Slin_3992 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.436
Lbys_2148
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.
       0.435
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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