STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2147KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: Putative uncharacterized protein. (961 aa)    
Predicted Functional Partners:
Lbys_3308
KEGG: sli:Slin_3137 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.749
Lbys_1434
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: dfe:Dfer_5216 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239).
 
     0.736
Lbys_2590
KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.714
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.658
Lbys_2146
DoxX family protein; InterPro IPR011637; KEGG: cpi:Cpin_6032 DoxX family protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX.
       0.655
Lbys_0931
KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.648
Lbys_0232
Hypothetical protein; InterPro IPR010916:IPR013026; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723).
  
     0.646
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
   
 0.588
Lbys_2148
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.
       0.570
Lbys_0610
KEGG: dfe:Dfer_4465 gliding motility-related protein; SPTR: Gliding motility-related protein.
  
     0.569
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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