Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Lbys_2147KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: Putative uncharacterized protein. (961 aa)    
Predicted Functional Partners:
Lbys_3308
KEGG: sli:Slin_3137 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.751
Lbys_1434
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: dfe:Dfer_5216 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239).
 
     0.736
Lbys_2590
KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.714
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.658
Lbys_2146
DoxX family protein; InterPro IPR011637; KEGG: cpi:Cpin_6032 DoxX family protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX.
       0.655
Lbys_0931
KEGG: sli:Slin_2039 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.651
Lbys_0232
Hypothetical protein; InterPro IPR010916:IPR013026; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723).
  
     0.646
Lbys_2148
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.
       0.609
Lbys_2149
Mammalian cell entry related domain protein; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: sli:Slin_4901 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
     
 0.595
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
   
 0.573
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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