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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2176KEGG: sli:Slin_5949 hypothetical protein; SPTR: Fjo24; PFAM: Peptidase family C25. (1033 aa)    
Predicted Functional Partners:
Lbys_2177
KEGG: dfe:Dfer_4247 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.904
Lbys_0488
InterPro IPR018550; KEGG: gfo:GFO_0335 secreted protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: Putative uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL).
  
  
 0.802
Lbys_2175
KEGG: chu:CHU_3070 hypothetical protein; SPTR: GTP-binding protein EngA; PFAM: SprT-like family.
       0.802
Lbys_2174
COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterProIPR006220:IPR011702:IPR001317:IPR006221:IPR 000991:IPR017926; KEGG: sli:Slin_5473 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.
       0.773
Lbys_2173
COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR019999:IPR006805:IPR015890; KEGG: dfe:Dfer_3790 anthranilate synthase; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme.
       0.746
Lbys_0069
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: sli:Slin_3042 response regulator receiver protein; PFAM: response regulator receiver; PglZ domain protein; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: PglZ domain; Response regulator receiver domain.
 
  
 0.733
Lbys_0610
KEGG: dfe:Dfer_4465 gliding motility-related protein; SPTR: Gliding motility-related protein.
  
   
 0.718
Lbys_3172
InterPro IPR005632; KEGG: sli:Slin_4435 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane protein (OmpH-like).
  
     0.705
Lbys_2023
KEGG: sli:Slin_6385 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.686
Lbys_2582
KEGG: chu:CHU_3167 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3467).
  
    0.664
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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