Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Lbys_2182Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cpi:Cpin_2298 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (286 aa)    
Predicted Functional Partners:
Lbys_0783
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cpi:Cpin_2428 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Possible HI0933-like protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.756
Lbys_2180
Hypothetical protein; KEGG: pmx:PERMA_1126 signal transduction response regulator; SPTR: Signal transduction response regulator.
       0.678
Lbys_2181
Hypothetical protein; KEGG: met:M446_0887 patatin; SPTR: Patatin; PFAM: Patatin-like phospholipase.
       0.678
Lbys_2183
Glyoxalase/bleomycin resistance protein/dioxygenase; InterPro IPR004360; KEGG: bcg:BCG9842_B2297 prolyl endopeptidase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Prolyl endopeptidase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
       0.651
Lbys_0211
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_5575 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family.
  
     0.643
Lbys_2318
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR018062:IPR000005; KEGG: zpr:ZPR_3376 putative regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative regulatory protein; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.604
Lbys_0216
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018062:IPR013096:IPR000005:IPR020449:IPR 018060; KEGG: cpi:Cpin_5587 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
  
     0.417
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.416
Lbys_0199
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018062:IPR000005:IPR020449:IPR018060; KEGG: cpi:Cpin_4585 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
   0.415
Lbys_2178
(LSU ribosomal protein L11P)-lysine N-methyltransferase; COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: sli:Slin_5617 ribosomal L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase.
       0.403
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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