STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Lbys_2185Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017871:IPR017896; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; PFAM: Molydopterin dinucleotide binding domain. (1008 aa)    
Predicted Functional Partners:
Lbys_2184
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR003088:IPR009056:IPR011031; KEGG: dfe:Dfer_3477 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Class III cytochrome C family; Cytochrome c.
 
 0.999
Lbys_2186
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dfe:Dfer_3475 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD.
 
 
 0.999
Lbys_2189
Quinol:cytochrome c oxidoreductase quinone-binding subunit 2; KEGG: sli:Slin_5669 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.997
Lbys_2187
KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein; PFAM: Protein of unknown function (DUF3341).
 
 
 0.993
Lbys_2188
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit; InterPro IPR003088:IPR009056; KEGG: dfe:Dfer_3473 cytochrome c family protein; PFAM: cytochrome c class I; SPTR: Cytochrome c family protein; PFAM: Cytochrome c.
 
 
 0.993
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.976
Lbys_0332
COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR009056:IPR003468:IPR003088; KEGG: dfe:Dfer_1787 cytochrome c oxidase mono-heme subunit/FixO; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; SPTR: Cytochrome C oxidase mono-heme subunit/FixO; PFAM: Cytochrome c; Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.972
Lbys_2758
Cytochrome c class I; InterPro IPR009056:IPR003088; KEGG: dfe:Dfer_5322 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome-c oxidase FixP chain; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III.
 
 
 0.937
Lbys_0235
Cytochrome c-related protein; InterPro IPR009056; KEGG: chu:CHU_2867 cytochrome c-related protein; SPTR: Class I diheme cytochrome c; PFAM: Cytochrome c.
  
 
 0.928
Lbys_0394
KEGG: rbi:RB2501_00261 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.928
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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