Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_2188Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit; InterPro IPR003088:IPR009056; KEGG: dfe:Dfer_3473 cytochrome c family protein; PFAM: cytochrome c class I; SPTR: Cytochrome c family protein; PFAM: Cytochrome c. (201 aa)    
Predicted Functional Partners:
Lbys_2186
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dfe:Dfer_3475 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD.
 
 
 
 0.995
Lbys_2187
KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein; PFAM: Protein of unknown function (DUF3341).
 
 
   0.995
Lbys_2189
Quinol:cytochrome c oxidoreductase quinone-binding subunit 2; KEGG: sli:Slin_5669 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.994
Lbys_2185
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017871:IPR017896; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; PFAM: Molydopterin dinucleotide binding domain.
 
 
 0.993
Lbys_2184
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR003088:IPR009056:IPR011031; KEGG: dfe:Dfer_3477 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Class III cytochrome C family; Cytochrome c.
 
 
 0.972
Lbys_2760
COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR009056:IPR003468:IPR004677; KEGG: phe:Phep_2484 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; SPTR: Cytochrome c oxidase, Cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxid [...]
  
 
 0.947
Lbys_2190
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.851
Lbys_2191
COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: dfe:Dfer_3470 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.827
Lbys_2194
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5674 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III.
  
 
 0.821
Lbys_2195
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5675 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III.
  
 
 0.786
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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