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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2197COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782:IPR017936; KEGG: sli:Slin_5677 electron transport protein SCO1/SenC; PFAM: electron transport protein SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC. (228 aa)    
Predicted Functional Partners:
Lbys_2190
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.975
Lbys_2198
Protein of unknown function DUF420; COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: dfe:Dfer_3463 protein of unknown function DUF420; PFAM: protein of unknown function DUF420; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF420).
 
  
 0.942
Lbys_2195
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5675 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III.
 
  
 0.910
Lbys_2191
COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: dfe:Dfer_3470 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.862
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.836
Lbys_2184
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR003088:IPR009056:IPR011031; KEGG: dfe:Dfer_3477 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Class III cytochrome C family; Cytochrome c.
 
  
 0.831
Lbys_2192
Cytochrome oxidase assembly; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: dfe:Dfer_3469 cytochrome oxidase assembly; PFAM: cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly; manually curated; PFAM: Cytochrome oxidase assembly protein.
 
 
 0.822
Lbys_2196
KEGG: dfe:Dfer_3465 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: caa(3)-type oxidase, subunit IV.
       0.811
Lbys_2199
KEGG: dfe:Dfer_3462 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.811
Lbys_2194
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5674 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III.
 
  
 0.808
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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