STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2207Oligopeptidase B; COGs: COG1770 Protease II; InterPro IPR002470:IPR004106; KEGG: sli:Slin_4734 oligopeptidase B; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family. (688 aa)    
Predicted Functional Partners:
Lbys_2208
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: sli:Slin_4736 peptidase M28; PFAM: peptidase M28; protease-associated PA domain protein; SPTR: Peptidase M28; PFAM: PA domain; Peptidase family M28.
       0.544
Lbys_3127
InterPro IPR000866:IPR017936; KEGG: cts:Ctha_1949 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Putative uncharacterized protein; PFAM: AhpC/TSA family.
 
      0.491
Lbys_2206
Thrombospondin type 3 repeat-containing protein; InterPro IPR018247:IPR003367:IPR006665; KEGG: fjo:Fjoh_0697 OmpA/MotB domain-containing protein; PFAM: Thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA family; Thrombospondin type 3 repeat.
       0.477
clpP
ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
  
 0.408
Lbys_1958
Prolyl oligopeptidase; COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR002471:IPR002470:IPR004106; KEGG: dfe:Dfer_4608 prolyl oligopeptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl oligopeptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family.
 
  
0.401
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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