STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2240Helix-turn-helix domain protein; InterPro IPR001387; KEGG: zpr:ZPR_1314 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix. (120 aa)    
Predicted Functional Partners:
Lbys_2241
KEGG: pyo:PY04679 hypothetical protein; SPTR: Putative uncharacterized protein PY04679.
       0.501
Lbys_0457
KEGG: zpr:ZPR_2896 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF3472).
  
     0.482
Lbys_2238
IS66 Orf2 family protein; InterPro IPR008878; KEGG: zpr:ZPR_3419 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; manually curated; PFAM: IS66 Orf2 like protein.
       0.400
Lbys_2239
Hypothetical protein; KEGG: aac:Aaci_2984 putative transposase orf1 for insertion sequence element; SPTR: Putative uncharacterized protein.
       0.400
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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