STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2255KEGG: phe:Phep_1935 hypothetical protein; SPTR: Putative uncharacterized protein. (326 aa)    
Predicted Functional Partners:
Lbys_2256
KEGG: dfe:Dfer_5660 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    
0.746
Lbys_2257
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR012373:IPR006860; KEGG: fjo:Fjoh_4790 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
     0.676
Lbys_2258
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_5658 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, [...]
 
   0.676
Lbys_2520
TonB-dependent receptor plug; InterPro IPR012910; KEGG: dfe:Dfer_4856 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor.
  
     0.628
Lbys_2259
KEGG: ote:Oter_1927 ATP/GTP-binding; SPTR: Periplasmic ATP/GTP-binding protein.
 
     0.507
Lbys_1621
KEGG: cpi:Cpin_3965 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.491
Lbys_1374
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3654 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug.
  
     0.459
Lbys_0250
KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S1/P1 Nuclease.
  
     0.454
Lbys_0959
Cyclic nucleotide-binding protein; InterPro IPR000595; KEGG: chu:CHU_1452 cyclic nucleotide binding regulatory protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain.
  
     0.404
Lbys_2495
InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); Uncharacterised protein family UPF0565.
  
     0.401
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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