Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_2256KEGG: dfe:Dfer_5660 hypothetical protein; SPTR: Putative uncharacterized protein. (530 aa)    
Predicted Functional Partners:
Lbys_2257
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR012373:IPR006860; KEGG: fjo:Fjoh_4790 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
     0.913
Lbys_2258
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_5658 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, [...]
 
   0.891
Lbys_2255
KEGG: phe:Phep_1935 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    
0.746
Lbys_3480
TonB-dependent receptor plug; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain.
 
     0.650
Lbys_2259
KEGG: ote:Oter_1927 ATP/GTP-binding; SPTR: Periplasmic ATP/GTP-binding protein.
 
     0.597
Lbys_1621
KEGG: cpi:Cpin_3965 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.551
Lbys_0250
KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S1/P1 Nuclease.
  
     0.547
Lbys_1280
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
 
 
 0.464
Lbys_0396
KEGG: cpi:Cpin_0224 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.448
Lbys_2249
anti-FecI sigma factor, FecR; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_1658 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
     0.428
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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