STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2269KEGG: fba:FIC_02299 hypothetical protein; SPTR: Putative uncharacterized protein. (189 aa)    
Predicted Functional Partners:
Lbys_2268
Transcriptional regulator; KEGG: zpr:ZPR_3535 hypothetical protein; SPTR: Possible transcriptional regulator.
 
     0.956
Lbys_2267
KEGG: lbf:LBF_2068 KefB related efflux transport protein; SPTR: Putative uncharacterized protein.
       0.620
Lbys_2271
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_2898 putative outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.557
Lbys_2581
Hypothetical protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: fba:FIC_01338 hypothetical protein; SPTR: Peptidase, S9A/B/C family, catalytic domain protein; PFAM: Prolyl oligopeptidase family.
 
     0.494
Lbys_2270
RagB/SusD domain protein; InterPro IPR012944; KEGG: zpr:ZPR_2897 RagB/SusD family protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD family protein; PFAM: SusD family.
  
    0.493
Lbys_3562
KEGG: sli:Slin_4633 putative transmembrane anti-sigma factor; SPTR: Putative transmembrane anti-sigma factor.
  
     0.444
Lbys_0303
Peptidase S9B dipeptidylpeptidase IV domain protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR018195:IPR010916:IPR002469; KEGG: sli:Slin_2851 peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region.
 
     0.439
Lbys_3560
KEGG: sli:Slin_4635 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.417
Lbys_2284
KEGG: sli:Slin_4983 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.410
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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