STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2271TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_2898 putative outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (969 aa)    
Predicted Functional Partners:
Lbys_2270
RagB/SusD domain protein; InterPro IPR012944; KEGG: zpr:ZPR_2897 RagB/SusD family protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD family protein; PFAM: SusD family.
 
     0.954
Lbys_2009
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bfs:BF0595 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.711
Lbys_0358
RagB/SusD domain protein; InterPro IPR012944; KEGG: dfe:Dfer_1849 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.696
Lbys_1869
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
     0.689
Lbys_3012
RagB/SusD domain protein; InterPro IPR012944:IPR002173; KEGG: dfe:Dfer_1459 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
     0.673
Lbys_3420
RagB/SusD domain protein; InterPro IPR012944; KEGG: phe:Phep_4138 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Outer membrane protein; PFAM: SusD family.
  
     0.627
Lbys_0457
KEGG: zpr:ZPR_2896 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF3472).
 
     0.600
Lbys_0271
RagB/SusD domain protein; InterPro IPR012944; KEGG: pru:PRU_2696 putative lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.589
Lbys_3117
COGs: COG4299 conserved hypothetical protein; KEGG: dfe:Dfer_1233 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1624).
  
     0.564
Lbys_2269
KEGG: fba:FIC_02299 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.557
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.