Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_2283InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490). (1594 aa)    
Predicted Functional Partners:
Lbys_2282
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_3196 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Surface antigen (D15); PFAM: Surface antigen.
 
   
 0.962
Lbys_2284
KEGG: sli:Slin_4983 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.691
Lbys_1833
InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP family containing protein; SPTR: NIPSNAP family containing protein; PFAM: NIPSNAP.
  
    0.592
Lbys_2079
KEGG: cpi:Cpin_7179 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: DinB family.
  
     0.583
Lbys_0722
KEGG: sli:Slin_2341 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: putative toxin-antitoxin system antitoxin component, TIGR02293 family.
 
     0.508
Lbys_2551
Tetratricopeptide repeat protein; InterPro IPR019734:IPR013026; KEGG: sli:Slin_5690 tetratricopeptide repeat protein; SPTR: Tetratricopeptide repeat protein.
  
     0.484
Lbys_3212
InterPro IPR003400; KEGG: fba:FIC_00415 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR.
  
     0.479
Lbys_1280
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
  
 0.476
Lbys_3450
KEGG: dfe:Dfer_2379 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor.
  
     0.475
Lbys_3213
InterPro IPR003400; KEGG: fba:FIC_00416 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport ExbD protein; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
  
     0.469
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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