Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_2297KEGG: sli:Slin_4489 hypothetical protein; SPTR: Putative uncharacterized protein. (155 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.752
Lbys_1683
InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1399.
  
     0.698
Lbys_0736
KEGG: sli:Slin_2018 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.660
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
       0.660
Lbys_1934
KEGG: dfe:Dfer_5769 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.613
Lbys_1667
KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.604
Lbys_0062
KEGG: dfe:Dfer_1244 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3098).
  
     0.599
Lbys_2296
Gliding-associated putative ABC transporter substrate-binding component GldG; COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019863:IPR019196; KEGG: sli:Slin_4905 gliding-associated putative ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding-associated putative ABC transporter substrate-binding component GldG; TIGRFAM: gliding-associated putative ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterized transport system; TIGRFAM: gl [...]
 
     0.598
Lbys_2654
KEGG: chu:CHU_2654 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.582
Lbys_1209
KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase.
  
     0.566
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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