STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2300COGs: COG3182 Uncharacterized iron-regulated membrane protein; KEGG: fjo:Fjoh_1252 PepSY-associated TM helix domain-containing protein; SPTR: PepSY-associated TM helix domain protein. (521 aa)    
Predicted Functional Partners:
Lbys_2301
KEGG: fjo:Fjoh_1253 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.795
Lbys_2302
KEGG: lmc:Lm4b_02727 hypothetical protein; SPTR: Putative membrane protein.
       0.773
Lbys_2303
TonB-dependent siderophore receptor; COGs: COG4774 Outer membrane receptor for monomeric catechols; InterPro IPR010105:IPR012910:IPR000531; KEGG: cpi:Cpin_2119 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Ferrichrome-iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.
 
  
 0.772
Lbys_2602
KEGG: dfe:Dfer_1668 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.548
Lbys_2428
YD repeat protein; InterPro IPR006530; KEGG: phe:Phep_1049 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: YD repeat protein; TIGRFAM: YD repeat protein.
  
     0.510
Lbys_2603
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1669 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: Protein of unknown function (DUF2012); TonB-dependent Receptor Plug Domain.
 
     0.501
Lbys_2429
Hypothetical protein; KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.500
Lbys_2740
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: fjo:Fjoh_3109 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; SPTR: Candidate beta-D-/alpha-L-glycosidase; Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43.
  
     0.464
Lbys_3287
Hypothetical protein; KEGG: fjo:Fjoh_3729 YD repeat-/rhs repeat-containing protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.457
Lbys_3265
Protein of unknown function DUF1680; COGs: COG3533 conserved hypothetical protein; InterPro IPR006558:IPR019775:IPR011081:IPR012878; KEGG: cpi:Cpin_4617 protein of unknown function DUF1680; PFAM: protein of unknown function DUF1680; Ig domain protein; SMART: LamG domain protein jellyroll fold domain protein; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); Bacterial Ig-like domain (group 4).
  
     0.453
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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