STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2301KEGG: fjo:Fjoh_1253 hypothetical protein; SPTR: Putative uncharacterized protein. (89 aa)    
Predicted Functional Partners:
Lbys_2300
COGs: COG3182 Uncharacterized iron-regulated membrane protein; KEGG: fjo:Fjoh_1252 PepSY-associated TM helix domain-containing protein; SPTR: PepSY-associated TM helix domain protein.
       0.795
Lbys_2302
KEGG: lmc:Lm4b_02727 hypothetical protein; SPTR: Putative membrane protein.
       0.773
Lbys_2303
TonB-dependent siderophore receptor; COGs: COG4774 Outer membrane receptor for monomeric catechols; InterPro IPR010105:IPR012910:IPR000531; KEGG: cpi:Cpin_2119 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Ferrichrome-iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.
       0.492
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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