STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2308Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR015237:IPR006589; KEGG: zpr:ZPR_2825 alpha-amylase precursor, GH13 family protein; PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; SPTR: Alpha-amylase, GH13 family protein; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF1939). (457 aa)    
Predicted Functional Partners:
Lbys_1730
COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein; TIGRFAM: trehalose synthase-fused probable maltokinase.
  
 0.967
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.942
Lbys_0586
COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase); InterPro IPR017045:IPR005196:IPR005195; KEGG: dfe:Dfer_2756 maltose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; SPTR: Kojibiose phosphorylase; PFAM: Glycosyl hydrolase family 65, N-terminal domain; Glycosyl hydrolase family 65 central catalytic domain.
  
 
 0.923
Lbys_3382
Glycoside hydrolase 97; InterPro IPR019563; KEGG: fjo:Fjoh_1209 hypothetical protein; PFAM: Glycoside hydrolase 97; SPTR: Candidate alpha-glucosidase; Glycoside hydrolase family 97; PFAM: Glycoside hydrolase 97.
 
  
 0.921
Lbys_2514
Glycoside hydrolase 97; InterPro IPR019563; KEGG: rmr:Rmar_0476 alpha-glucosidase, putative, adg97A; PFAM: Glycoside hydrolase 97; SPTR: Alpha-glucosidase, putative, adg97A; PFAM: Glycoside hydrolase 97.
 
  
 0.916
Lbys_2307
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR015171:IPR006047:IPR019492:IPR006589; KEGG: cja:CJA_0735 alpha-amylase, putative, amy13E; PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; Cyclo-malto-dextrinase-like; SMART: alpha amylase catalytic sub domain; SPTR: Neopullulanase; manually curated; PFAM: Cyclomaltodextrinase, N-terminal; Alpha amylase, catalytic domain; Cyclo-malto-dextrinase C-terminal domain; Belongs to the glycosyl hydrolase 13 family.
 
     0.842
Lbys_2310
RagB/SusD domain protein; InterPro IPR018130:IPR012944; KEGG: cpi:Cpin_5091 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
 
  
 0.728
Lbys_2311
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6166 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.712
Lbys_2655
Amino acid/polyamine/organocation transporter, APC superfamily; COGs: COG0531 Amino acid transporter; InterPro IPR000358:IPR002293:IPR004841; KEGG: fjo:Fjoh_1930 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3.
   
 0.698
Lbys_2839
Amino acid/polyamine/organocation transporter, APC superfamily; COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: dfe:Dfer_4823 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3.
   
 0.698
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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