STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2341COGs: COG4952 sugar isomerase; InterPro IPR012307; KEGG: fjo:Fjoh_4214 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. (423 aa)    
Predicted Functional Partners:
Lbys_2340
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: fjo:Fjoh_4213 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase, FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
 
   
 0.955
Lbys_2342
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterPro IPR013454:IPR002347:IPR002198:IPR001303; KEGG: fjo:Fjoh_4215 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.951
Lbys_2346
Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524; KEGG: phe:Phep_3881 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Regulatory protein GntR HTH; PFAM: Bacterial regulatory proteins, gntR family.
 
     0.842
Lbys_2343
InterPro IPR010476; KEGG: fjo:Fjoh_4216 rhamnose-proton symporter; PFAM: RhaT l-rhamnose-proton symport 2; SPTR: RhaT l-rhamnose-proton symport 2; PFAM: L-rhamnose-proton symport protein (RhaT).
 
     0.803
Lbys_2339
COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR012133:IPR008259:IPR000262; KEGG: zpr:ZPR_2958 L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; PRIAM: L-lactate dehydrogenase (cytochrome); SPTR: L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase.
 
     0.728
Lbys_2344
alpha-L-rhamnosidase; InterPro IPR013737:IPR008902; KEGG: cpi:Cpin_6026 alpha-L-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; Belongs to the glycosyl hydrolase 2 family.
 
     0.701
Lbys_2354
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.585
Lbys_2345
Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847; KEGG: spe:Spro_2282 LysR family transcriptional regulator; PFAM: regulatory protein LysR; SPTR: Als operon regulatory protein AlsR; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family.
       0.473
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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