STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2355Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905:IPR001087; KEGG: bvu:BVU_0151 putative cytoplasmic protein; PFAM: glycosyl hydrolase family 88; lipolytic protein G-D-S-L family; SPTR: Putative uncharacterized protein; PFAM: Glycosyl Hydrolase Family 88; GDSL-like Lipase/Acylhydrolase. (701 aa)    
Predicted Functional Partners:
Lbys_2356
KEGG: bth:BT_4175 hypothetical protein; SPTR: FG-GAP repeat protein.
 
 0.982
Lbys_2350
InterPro IPR006104; KEGG: bth:BT_4145 hypothetical protein; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: Sugar binding domain protein, glycosyl hydrolase family 2; PFAM: Glycosyl hydrolases family 2, sugar binding domain.
 
 
 0.974
Lbys_2349
Glycoside hydrolase family 43; InterPro IPR006710; KEGG: bth:BT_4152 beta-galactosidase I; PFAM: glycoside hydrolase family 43; SPTR: Beta-galactosidase I; PFAM: Glycosyl hydrolases family 43.
 
   
 0.940
Lbys_2351
Glycoside hydrolase family 28; COGs: COG5434 Endopygalactorunase; InterPro IPR000568:IPR000743:IPR006626; KEGG: bth:BT_4146 exo-poly-alpha-D-galacturonosidase precursor; PFAM: glycoside hydrolase family 28; SPTR: Exo-poly-alpha-D-galacturonosidase; PFAM: Glycosyl hydrolases family 28.
 
 
 0.934
Lbys_2354
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
     0.890
Lbys_2357
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0172 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
 
   0.806
Lbys_2353
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: phe:Phep_0449 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88.
 
    
0.799
Lbys_0587
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR018040:IPR000070; KEGG: sli:Slin_4787 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
   
 0.792
Lbys_1625
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR000070:IPR018040; KEGG: phe:Phep_1157 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
   
 0.789
Lbys_2352
KEGG: bth:BT_4147 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.775
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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