STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2358TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: pru:PRU_1591 putative receptor antigen RagA; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (1020 aa)    
Predicted Functional Partners:
Lbys_2357
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0172 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.942
Lbys_2350
InterPro IPR006104; KEGG: bth:BT_4145 hypothetical protein; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: Sugar binding domain protein, glycosyl hydrolase family 2; PFAM: Glycosyl hydrolases family 2, sugar binding domain.
 
     0.863
Lbys_2529
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0510 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative lipoprotein; PFAM: SusD family.
  
     0.769
Lbys_0007
RagB/SusD domain protein; InterPro IPR012944; KEGG: zpr:ZPR_1015 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.760
Lbys_0375
RagB/SusD domain protein; InterPro IPR012944; KEGG: fjo:Fjoh_2021 RagB/SusD domain-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.744
Lbys_0271
RagB/SusD domain protein; InterPro IPR012944; KEGG: pru:PRU_2696 putative lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.709
Lbys_0834
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0842 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.707
Lbys_2355
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905:IPR001087; KEGG: bvu:BVU_0151 putative cytoplasmic protein; PFAM: glycosyl hydrolase family 88; lipolytic protein G-D-S-L family; SPTR: Putative uncharacterized protein; PFAM: Glycosyl Hydrolase Family 88; GDSL-like Lipase/Acylhydrolase.
 
     0.674
Lbys_2356
KEGG: bth:BT_4175 hypothetical protein; SPTR: FG-GAP repeat protein.
 
     0.659
Lbys_2247
RagB/SusD domain protein; InterPro IPR012944; KEGG: fjo:Fjoh_2078 RagB/SusD domain-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: SusD family.
  
     0.645
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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