STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2435Hypothetical protein; KEGG: phe:Phep_1050 YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain. (406 aa)    
Predicted Functional Partners:
Lbys_2428
YD repeat protein; InterPro IPR006530; KEGG: phe:Phep_1049 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: YD repeat protein; TIGRFAM: YD repeat protein.
 
     0.777
Lbys_2436
KEGG: cba:CLB_1393 putative lipoprotein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_3286
YD repeat protein; InterPro IPR006530; KEGG: phe:Phep_1098 hypothetical protein; PFAM: YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: YD repeat protein; TIGRFAM: YD repeat (two copies).
  
     0.772
Lbys_2433
Hypothetical protein; KEGG: bth:BT_2927 putative cell wall-associated protein precursor; SPTR: YD repeat protein; TIGRFAM: RHS repeat-associated core domain.
 
    
0.678
Lbys_2991
Hypothetical protein; KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; TIGRFAM: Bacteroides forsythus 147-residue repeat.
  
     0.619
Lbys_0686
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.598
Lbys_0682
KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.569
Lbys_0681
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides forsythus 147-residue repeat.
  
     0.562
Lbys_0687
KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.555
Lbys_0680
InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain.
 
    0.548
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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