STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2455Glycosyl transferase family 2; InterPro IPR001173; KEGG: min:Minf_0545 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: SpsA-like protein; PFAM: Glycosyl transferase family 2. (283 aa)    
Predicted Functional Partners:
Lbys_2630
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2586 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
    0.533
Lbys_0648
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gfo:GFO_2279 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Galactosyltransferase; Glycosyl transferase family 2.
     0.423
Lbys_1215
Transferase hexapeptide repeat containing protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: dfe:Dfer_0251 putative colanic acid biosynthesis acetyltransferase WcaF; PFAM: transferase hexapeptide repeat containing protein; SPTR: Acetyltransferase.
 
  
 0.408
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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