STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2468Glucose-1-phosphate cytidylyltransferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR013446:IPR005835; KEGG: bfs:BF2603 putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate cytidylyltransferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase. (258 aa)    
Predicted Functional Partners:
Lbys_2467
CDP-glucose 4,6-dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR013445:IPR001509; KEGG: bfs:BF2602 putative LPS biosynthesis related DNTP-hexose dehydratase-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: CDP-glucose-4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: CDP-glucose 4,6-dehydratase.
 
 0.995
Lbys_1694
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterProIPR005844:IPR005845:IPR005846:IPR005841:IPR 016066; KEGG: dfe:Dfer_4939 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; SPTR: Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; [...]
  
 
 0.943
Lbys_3342
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterProIPR016066:IPR005841:IPR005844:IPR005845:IPR 005846:IPR005843; KEGG: sli:Slin_2856 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphoglucomutase/phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/ph [...]
 
  
 0.943
Lbys_0264
COGs: COG0438 Glycosyltransferase; InterPro IPR012821:IPR001296:IPR006380; KEGG: dak:DaAHT2_1337 sucrose-phosphate synthase; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1; PRIAM: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; SPTR: Sucrose-phosphate synthase; PFAM: Sucrose synthase; Glycosyl transferases group 1; Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: sucrose-6F-phosphate phosphohydrolase; sucrose-phosphate synthase, putative, glycosyltransferase domain; HAD-superfamily hydrolase, subfamily IIB; sucrose phosphate synthase, sucrose phosp [...]
  
 0.926
Lbys_0489
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2738 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1.
  
 0.921
Lbys_0668
NUDIX hydrolase; InterPro IPR000086; KEGG: dfe:Dfer_1953 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain.
  
  0.910
Lbys_2466
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR020904:IPR001509; KEGG: cth:Cthe_2558 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-binding protein; PFAM: NAD dependent epimerase/dehydratase family.
 
 
 0.882
Lbys_3333
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.874
Lbys_2865
Glycogen(starch) synthase; InterPro IPR008631:IPR022272; KEGG: dfe:Dfer_3735 glycogen (starch) synthase; PFAM: glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Glycogen (Starch) synthase; PFAM: Glycogen synthase.
  
 0.842
Lbys_0312
HAD-superfamily hydrolase, subfamily IA, variant 3; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006402:IPR005834:IPR005833; KEGG: dfe:Dfer_5618 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
  
 
  0.814
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.