STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2489InterPro IPR010496; KEGG: dfe:Dfer_3235 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: PA14 domain; Domain of Unknown Function (DUF1080). (588 aa)    
Predicted Functional Partners:
Lbys_2490
Cytochrome c class I; InterPro IPR009056:IPR002324:IPR003088; KEGG: dfe:Dfer_3236 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I.
     0.959
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.771
Lbys_3149
Membrane-bound dehydrogenase domain protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR009056:IPR013428:IPR013427; KEGG: dfe:Dfer_3060 membrane-bound dehydrogenase domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.749
Lbys_1152
Cytochrome c class I; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterProIPR000601:IPR003088:IPR002324:IPR009056:IPR 001202; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: cytochrome c class I; PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Cytochrome c class I; PFAM: Cytochrome c; Trehalose utilisation.
 
     0.742
Lbys_1153
PBS lyase HEAT domain protein repeat-containing protein; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR009056; KEGG: dfe:Dfer_4620 heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Heme-binding protein; PFAM: HEAT repeat; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
     0.698
Lbys_3013
Hypothetical protein; InterPro IPR009056; KEGG: sli:Slin_3038 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.695
Lbys_0455
KEGG: dfe:Dfer_4410 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.656
Lbys_2289
InterPro IPR010496; KEGG: dfe:Dfer_4250 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080).
 
     0.611
Lbys_3135
Xylose isomerase domain-containing protein TIM barrel; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307:IPR017909:IPR006311; KEGG: dfe:Dfer_3054 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Hydroxypyruvate isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
   
 0.564
Lbys_1799
COGs: COG4993 Glucose dehydrogenase; InterProIPR019551:IPR002372:IPR019556:IPR003088:IPR 018391:IPR009056; KEGG: sli:Slin_2450 PQQ-dependent enzyme-like protein; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein; cytochrome c class I; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: PQQ-dependent enzyme-like protein; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat.
  
     0.550
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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