STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2495InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); Uncharacterised protein family UPF0565. (199 aa)    
Predicted Functional Partners:
Lbys_0564
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_2726 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Surface antigen (D15); PFAM: Surface antigen.
 
  
 0.724
Lbys_3033
KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.647
Lbys_3050
Phosphoribosylformylglycinamidine cyclo-ligase; COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: dfe:Dfer_4180 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal domain.
  
     0.630
Lbys_1582
Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: dfe:Dfer_0035 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.629
Lbys_1725
Putative membrane protein; InterPro IPR019861; KEGG: dfe:Dfer_2914 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
  
     0.620
Lbys_1280
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
 
 
 0.618
Lbys_2496
Nuclease (SNase domain-containing protein); COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021; KEGG: fba:FIC_01092 prophage LambdaCh01, nuclease domain protein; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); SPTR: Prophage LambdaCh01, nuclease domain protein; PFAM: Staphylococcal nuclease homologue.
       0.601
Lbys_1969
KEGG: sli:Slin_5597 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.585
Lbys_1607
DoxX family protein; InterPro IPR011637; KEGG: dfe:Dfer_0221 DoxX family protein; PFAM: DoxX family protein; SPTR: DoxX family protein; PFAM: DoxX.
  
     0.572
Lbys_3171
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: sli:Slin_4434 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
  
 0.563
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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