STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2512alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: sli:Slin_1237 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase domain protein; PFAM: Alpha-L-arabinofuranosidase C-terminus. (510 aa)    
Predicted Functional Partners:
Lbys_2511
alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: zpr:ZPR_2145 alpha-L-arabinofuranosidase A precursor; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase A; PFAM: Alpha-L-arabinofuranosidase C-terminus.
 
 
 
0.983
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.951
Lbys_2513
Protein of unknown function DUF1680; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: fjo:Fjoh_3876 hypothetical protein; PFAM: protein of unknown function DUF1680; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680).
 
    0.924
Lbys_2740
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: fjo:Fjoh_3109 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; SPTR: Candidate beta-D-/alpha-L-glycosidase; Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43.
 
 
 0.921
uxaC
COGs: COG1904 Glucuronate isomerase; InterPro IPR003766; KEGG: sli:Slin_4786 glucuronate isomerase; PFAM: Glucuronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Glucuronate isomerase; PFAM: Glucuronate isomerase.
     
 0.815
Lbys_2514
Glycoside hydrolase 97; InterPro IPR019563; KEGG: rmr:Rmar_0476 alpha-glucosidase, putative, adg97A; PFAM: Glycoside hydrolase 97; SPTR: Alpha-glucosidase, putative, adg97A; PFAM: Glycoside hydrolase 97.
       0.732
Lbys_2507
COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: sli:Slin_1236 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase.
 
  
 0.636
Lbys_2328
COGs: COG3661 Alpha-glucuronidase; InterPro IPR011395:IPR011100:IPR011099; KEGG: sli:Slin_6197 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; PRIAM: Alpha-glucuronidase; SPTR: Alpha-glucuronidase; PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.578
Lbys_2509
L-ribulokinase; COGs: COG1069 Ribulose kinase; InterPro IPR005929:IPR018484:IPR018485; KEGG: sli:Slin_1239 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase; Belongs to the ribulokinase family.
 
  
 0.563
Lbys_2325
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: zpr:ZPR_1033 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.540
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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