Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_2525Radical SAM domain protein; COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif; InterPro IPR000532:IPR007197; KEGG: phe:Phep_0194 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily. (413 aa)    
Predicted Functional Partners:
Lbys_2524
KEGG: dfe:Dfer_1203 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.958
Lbys_2526
Glycoside hydrolase family 43; InterPro IPR006710; KEGG: zpr:ZPR_0914 beta-glucanase precursor; PFAM: glycoside hydrolase family 43; SPTR: Beta-glucanase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
       0.541
Lbys_2527
COGs: COG4289 conserved hypothetical protein; InterPro IPR016624; KEGG: sli:Slin_1470 hypothetical protein; PFAM: Uncharacterised conserved protein UCP014753; SPTR: Uncharacterized conserved protein UCP014753; PFAM: Uncharacterized protein conserved in bacteria (DUF2264).
       0.541
Lbys_2528
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: bth:BT_3687 hypothetical protein; PFAM: glycosyl hydrolase family 88; SPTR: Putative uncharacterized protein; PFAM: Glycosyl Hydrolase Family 88.
       0.541
Lbys_2529
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0510 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative lipoprotein; PFAM: SusD family.
       0.415
Lbys_0988
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: gfo:GFO_0277 uncharacterized stress protein (general stress protein 26); PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Uncharacterized stress protein (General stress protein 26); PFAM: Pyridoxamine 5'-phosphate oxidase.
 
     0.413
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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