STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2602KEGG: dfe:Dfer_1668 hypothetical protein; SPTR: Putative uncharacterized protein. (448 aa)    
Predicted Functional Partners:
Lbys_2603
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1669 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: Protein of unknown function (DUF2012); TonB-dependent Receptor Plug Domain.
 
     0.957
Lbys_2562
Flavodoxin/nitric oxide synthase; COGs: COG0369 Sulfite reductase alpha subunit (flavoprotein); InterPro IPR008254:IPR008333:IPR001433; KEGG: dfe:Dfer_1665 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; SPTR: Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Oxidoreductase NAD-binding domain.
 
     0.711
Lbys_2561
KEGG: dfe:Dfer_1666 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2271).
 
     0.705
Lbys_2560
Ankyrin; InterPro IPR002110:IPR020683; KEGG: dfe:Dfer_1667 ankyrin; PFAM: Ankyrin; SMART: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat.
 
     0.688
Lbys_2094
KEGG: fjo:Fjoh_3287 hypothetical protein; SPTR: Hypothetical lipoprotein.
  
     0.603
Lbys_0220
KEGG: dfe:Dfer_3756 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.595
Lbys_2300
COGs: COG3182 Uncharacterized iron-regulated membrane protein; KEGG: fjo:Fjoh_1252 PepSY-associated TM helix domain-containing protein; SPTR: PepSY-associated TM helix domain protein.
 
     0.556
Lbys_1452
KEGG: dfe:Dfer_3389 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.472
Lbys_2093
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_3288 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.465
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.437
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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