STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2628TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: srm:SRM_00330 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor. (989 aa)    
Predicted Functional Partners:
Lbys_2627
KEGG: srm:SRM_00331 conserved hypothetical protein, secreted; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.952
Lbys_2009
RagB/SusD domain-containing protein; InterPro IPR012944; KEGG: bfs:BF0595 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.545
Lbys_0432
InterPro IPR002052:IPR002296; KEGG: mar:MAE_63060 putative type IIS restriction/modification enzyme; SPTR: Putative type IIS restriction/modification enzyme; PFAM: Eco57I restriction endonuclease.
  
     0.540
Lbys_0620
InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; PFAM: Zinc carboxypeptidase.
  
     0.451
Lbys_0358
RagB/SusD domain protein; InterPro IPR012944; KEGG: dfe:Dfer_1849 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.425
Lbys_2494
KEGG: cpi:Cpin_5838 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911).
  
     0.406
Lbys_1447
Hydrolase CocE/NonD family protein; COGs: COG2936 acyl esterase; InterPro IPR013736:IPR005674; KEGG: sli:Slin_0314 X-Pro dipeptidyl-peptidase domain protein; PFAM: X-Pro dipeptidyl-peptidase domain protein; SPTR: X-Pro dipeptidyl-peptidase domain protein; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family.
  
     0.405
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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