STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_2632KEGG: dfe:Dfer_4790 putative glycosyltransferase; SPTR: Putative glycosyltransferase; PFAM: Glycosyl transferase family 2. (297 aa)    
Predicted Functional Partners:
Lbys_2635
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fps:FP1376 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
      0.889
Lbys_0916
Transferase hexapeptide repeat containing protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: pmu:PM1197 VatB; PFAM: transferase hexapeptide repeat containing protein; SPTR: VatB; PFAM: Bacterial transferase hexapeptide (three repeats).
    
 0.814
Lbys_2633
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: chu:CHU_2768 membrane export protein; PFAM: polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein.
  
  
 0.800
Lbys_2634
Hypothetical protein; KEGG: bhy:BHWA1_02264 methyltransferase; SPTR: Methyltransferase, FkbM family; TIGRFAM: methyltransferase, FkbM family.
  
    0.783
Lbys_2470
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bcr:BCAH187_A5441 putative glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Putative glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
 0.670
Lbys_2636
Hypothetical protein.
       0.570
Lbys_0053
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: dfe:Dfer_2771 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
  
 0.459
Lbys_2502
Biotin/lipoyl attachment domain-containing protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: fps:FP0295 ABC transporter membrane fusion efflux protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein.
 
   
 0.454
Lbys_2637
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004838:IPR001176:IPR004839; KEGG: dfe:Dfer_3724 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
       0.435
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.435
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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